High Performance Computing (HPC) in Life Sciences: Vital-IT & UniFr-UniBe Infrastructure Training
Fribourg, 3 December 2015
|Trainers:||Vassilios Ioannidis, Grégoire Rossier|
|Venue:||Room 2.225, Building DOKPE-Geographie 14 (PER14), University of Fribourg|
|ECTS:||0.25 (given a passed exam)|
||1 December 2015|
Several scientific applications require computing and/or storage resources that go beyond the processing power of a single multi-core machine. High performance computing (HPC) clusters provide the necessary hardware and software infrastructure to efficiently run computing and data intensive applications. The course provides detailed information on how to efficiently use Vital-IT's compute and storage infrastructure for life science applications.
This course is reserved for people wanting to use the Vital-IT cluster. People using the UBELIX infrastructure are welcome too.
- Obtain basic knowledge on high throughput and high performance computing
- Learn how to use Vital-IT's infrastructure for scientific applications (including hands-on exercises)
- Tips and tricks for effective and efficient cluster usage (incl. compute and storage usage guidelines)
- Discuss particular computing needs and requirements of course participants
Knowledge / competencies:
- Basic understanding of working with command line tools on Linux or Windows-based operating systems. If you do not feel comfortable with UNIX commands, please take our UNIX fundamentals e-learning module.
- Scripting language such as bash or Perl is an asset
- Please bring your own laptop with WIFI Eduroam activated (Windows with Putty application installed or a Linux or Mac with a Terminal application)
- Complete the exercise 'UNIX evalutation' at least 4 days before the course - see below
Application is closed
Beware, location has changed!
University of Fribourg, Building DOKPE-Géographie 14 (PER14 on the linked map), room 2.225
The course will be taught by Vassilios Ioannidis and Grégoire Rossier, with the assistance of Ivan Topolsky for the practicals.
We will recommend 0.25 ECTS credits for this course (given a passed oral exam at the end of the session and a written exercise).
You are welcome to register to the SIB courses mailing-list to be informed of all future courses and workshops, as well as all important deadlines using the form here.